Haplogroup motifs

This table shows the motifs used to classify sequences types in the paper.
Haplogroup
HVS-I motif
73 status
Coding-region mutations
L1a 148 172 187 188G 189 223 230 311 320
A
+3592HpaI
L1b 126 187 189 223 264 270 278 311
G
+3592HpaI
L1c 129 187 189 223 278 294 311 360
G
+3592HpaI
L1e 129 148 166 187 189 223 278 311
G
+3592HpaI
L1f 169 187 189 223 230 278 311 327
G
+3592HpaI
L2 223 278 390
G
+3592HpaI
L3 223
G
 
>L3b 124 223 278 362
G
+10084TaqI
>L3d 124 223
G
-8616MboI
>L3e 223
G
+2349MboI
>M 223
G
+10397AluI
>>M1 129 189 223 249 311
G
+10397AluI
>>C 223 298 327
G
+10397AluI
-13259HincII/+13262AluI
>>D 223 362
G
-5176AluI
+10397AluI
>>E 223 227 362
G
-7598HhaI
+10397AluI
>>G 017 129 223
G
+4830HaeII/+4831HhaI
+10397AluI
>>Z 185 223 224 260 298
G
+10397AluI
>N 223
G
+10871MnlI (present also in all below)
>>N1 223
G
+10237HphI
>>>N1a 147A/G 172 223 248 355
G
+10237HphI
>>>N1b 145 176G 223
G
+10237HphI
>>>N1c 223 265
G
+10237HphI
>>>I 129 223 391
G
+10032AluI
>>A 223 290 319
G
+663HaeIII
>>W 223 292
G
-8994HaeIII
>>X 189 223 278
G
+14465AccI
>>R CRS
G
 
>>>R1 278 311
G
 
>>>R2 071
G
 
>>>B 189
G
9bp del COII-tRNALys
>>>F 304
G
-12406HincII/-12406HpaI
>>>Y 126 231 266
G
+7933MboI
-8391HaeIII
>>>JT 126
G
+4216NlaIII
>>>>J 069 126
G
+4216NlaIII
-13704BstOI
>>>>>J1 069 126 261
G
+4216NlaIII
-13704BstOI
>>>>>>J1a 069 126 145 231 261
G
+4216NlaIII
-13704BstOI
>>>>>>J1b 069 126 145 222 261
G
+4216NlaIII
-13704BstOI
>>>>>>>J1b1 069 126 145 172 222 261
G
+4216NlaIII
-13704BstOI
>>>>>J2 069 126 193
G
+4216NlaIII
-13704BstOI
>>>>T 126 294
G
+4216NlaIII
+13366BamHI/-13367AvaII/+13367MboI
+15606AluI
-15925MspI
>>>>>T1 126 163 186 189 294
G
+4216NlaIII
-12629AvaII
+13366BamHI/-13367AvaII/+13367MboI
+15606AluI
-15925MspI
>>>>>T2 126 294 304
G
+4216NlaIII
+13366BamHI/-13367AvaII/+13367MboI
+15606AluI
-15925MspI
>>>>>T3 126 292 294
G
+4216NlaIII
+13366BamHI/-13367AvaII/+13367MboI
+15606AluI
-15925MspI
>>>>>T4 126 294 324
G
+4216NlaIII
+13366BamHI/-13367AvaII/+13367MboI
+15606AluI
-15925MspI
>>>>>T5 126 153 294
G
+4216NlaIII
+13366BamHI/-13367AvaII/+13367MboI
+15606AluI
-15925MspI
>>>U CRS
G
+12308HinfI
>>>>U1 249
G
-4990AluI
+12308HinfI
-13103HinfI/+13104MboI
+14068TaqI
>>>>>U1a 189 249
G
-4990AluI
+12308HinfI
-13103HinfI/+13104MboI
+14068TaqI
>>>>>U1b 249 327
G
-4990AluI
+12308HinfI
-13103HinfI/+13104MboI
+14068TaqI
>>>>U2 051 129C
G
+12308HinfI
+15907RsaI
>>>>U3 343
G
+12308HinfI
>>>>U4 356
G
+4643RsaI
+11329AluI
+12308HinfI
>>>>U5 270
G
+12308HinfI
>>>>>U5a 192 270
G
+12308HinfI
>>>>>>U5a1 192 256 270
G
+12308HinfI
>>>>>>>U5a1a 256 270 399
G
+12308HinfI
>>>>>U5b 189 270
G
+12308HinfI
>>>>>>U5b1 144 189 270
G
+12308HinfI
>>>>U6 172 219
G
+12308HinfI
>>>>>U6a 172 219 278
G
+12308HinfI
>>>>>>U6a1 172 189 219 278
G
+12308HinfI
>>>>>U6b 172 219 311
G
+12308HinfI
>>>>U7 318T
G
+12308HinfI
>>>>K 224 311
G
-9052HaeII/-9053HhaI
+12308HinfI
>>>pre-HV CRS
A
+11718HaeIII
>>>>pre-HV (see note below) 126 362
A
+11718HaeIII
>>>>HV CRS
A
+11718HaeIII
-14766MseI
>>>>>HV1 067
A
+11718HaeIII
-14766MseI
>>>>>H CRS
A
-7025AluI
+11718HaeIII
-14766MseI
>>>>>V 298
A
-4577NlaIII
+11718HaeIII
-14766MseI

Notes

Vincent A Macaulay
vincent@stats.gla.ac.uk
10th September 2000