Softwares

H o m e R e s e a r c h R e s u m e S o f t w a r e

SPACE: R code for SPatially correlated Principal Analysis of Conditional Expectation

Zipped R Code

ProtMAT: Protein Microarray Analysis Tool

Web Server

Perform your Analysis

FAQ

Documentation

QUADRISK: Software for calculating Quadratic Risk

Binary Code for Linux Architecture[QUADRISK_linux]

Binary Code for Unix Architecture[QUADRISK_unix]

Binary Code for MAC OS X Architecture[QUADRISK_osx]

Related Paper: Model selection in High-Dimensions: A Quadratic-risk Based Approach S. Ray and B.G. Lindsay [To appear in the Journal of the Royal Statistical Society - Series B]
pdf | ps | arxiv

README file

PDF Documentation file

HMAC: Software for Hiererchical Modal Clustering

Download the package [Installation instructions included]

PDF Documentation

Matlab codes

R codes

Related paper A Nonparametric Statistical Approach to Clustering via Mode Identification Jia Li, Surajit Ray and Bruce G Lindsay and [ Journal of Machine Learning Research 8(Aug):1687--1723, 2007 ]
pdf | Journal Page

MODALITY: Software for finding the number of modes of a multivariate normal

R-Code with a set of functions[modality.r]

MHCPROP: Software for MHC binder prediction based on biophysiochemical properties

R-Code for conversion of peptide sequence Data to peptide Biophyiscal property values [mhcpropbinder.r]

R-Code for variable selection based on misclassification error [varsel.r]

Property values for amino acid used in this paper [properties.dat], [ properties.xls includes refernces]

Example peptide Sequence data [peptideYN.dat]

PDIV: Generalized Power Divergence Statistics

R-Code and the corresponding Readme document;